R packages & research software

Tools for survival analysis, recurrent events, and statistical computing. Each entry links to documentation, source code or examples, and related publications where available.

R package

FunSurv

Functional predictors for recurrent events

Jointly model longitudinal measurements and recurrent events using functional regression with autoregressive frailty.

R package

reReg

Regression for recurrent events

Fit regression models for recurrent events and terminal outcomes, with tools for visualization and simulation.

R package

aftgee

Accelerated failure time models

Fit accelerated failure time models with rank-based estimation and generalized estimating equations.

Research code

reForest

Prediction of recurrent events

Code and examples for global and episode-specific prediction using survival tree ensembles.

R package

pseudoCure

Survival analysis with a cure fraction

Fit cure models using pseudo-observations, including variable selection through penalized generalized estimating equations.

R package

censCov

Regression with censored covariates

Use deletion and completion threshold regression for linear models with a randomly censored covariate.

R package

permDep

Tests for dependent truncation

Test quasi-independence in left-truncated, right-censored survival data using permutation methods.

R package

rocTree

ROC-guided survival trees and forests

Build survival trees and ensembles using ROC-guided methods for event-time prediction.

R package

spef

Models for panel count data

Fit semiparametric regression models for panel count survival data using estimating functions.

R package

tranSurv

Survival under dependent truncation

Analyze left-truncated, right-censored survival data using a structural transformation model.